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1. FeatureFlow FeatureFlow Public

   Genome Feature annotations with EarlGrey and Braker4

   Nextflow

2. pg4findr pg4findr Public

   Search for G-quadruplex motifs in sequencing reads and genome assemblies.

   Rust

3. fasta2embeddings fasta2embeddings Public

   Create embeddings out of any fasta/fastq nucleotide sequences. Great for downstream machine learning tasks.

   Python

4. simple-asm simple-asm Public

   A simple genome assembly pipeline with PacBio HiFi + Hi-C raw data.

   Nextflow

5. molecular-genetics-notes molecular-genetics-notes Public

   Learn Biology with CLI coding agents.

   Typst

6. shortasm shortasm Public

   De Bruijn graphs with short reads

   Python