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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 147 47

Repositories

Showing 10 of 122 repositories
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse's past year of commit activity
    Rust 6 MIT 1 35 2 Updated Nov 5, 2026
  • FitNMF Public

    Inferring viral variants and fitness advantages from longitudinal wastewater sequencing data

    cbg-ethz/FitNMF's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 5, 2026
  • demoTape Public

    Computational demultiplexing of targeted single-cell sequencing (tapestri) data

    cbg-ethz/demoTape's past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Nov 4, 2026
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo's past year of commit activity
    Python 1 MIT 2 8 1 Updated Nov 4, 2026
  • LolliPop Public

    Deconvolution for Wastewater Genomics

    cbg-ethz/LolliPop's past year of commit activity
    Jupyter Notebook 11 GPL-3.0 1 7 1 Updated Nov 2, 2026
  • Spatial_FKG Public

    A simulation method based on the Feynman–Kac-inspired Gillespie algorithm for spatial cancer–immune dynamics

    cbg-ethz/Spatial_FKG's past year of commit activity
    Python 0 MIT 0 0 0 Updated Nov 2, 2026
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin's past year of commit activity
    Shell 7 3 0 1 Updated Oct 27, 2026
  • cowwid Public

    Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

    cbg-ethz/cowwid's past year of commit activity
    Jupyter Notebook 9 0 3 3 Updated Oct 23, 2026
  • SC-Bulk-Domain-Adaptation Public
    cbg-ethz/SC-Bulk-Domain-Adaptation's past year of commit activity
    Python 2 MIT 0 0 0 Updated Oct 20, 2026
  • RSV-wastewater-2024-2025 Public

    Computational analysis of wastewater-derived Respiratory Syncytial Virus (RSV) data collected during the 2024–2025 season in Switzerland.

    cbg-ethz/RSV-wastewater-2024-2025's past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Oct 19, 2026
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