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niconm89/README.md

Hi, I'm Nicolás

I'm a bioinformatician and evolutionary biologist from Argentina, now based in Valencia, Spain.

Studying bioinformatics gave me strong technical tools, but I soon felt I was missing the biology behind the data. That’s why I did my PhD in evolutionary biology, and why most of what you’ll find here started as a biological question.

During my PhD I assembled the genomes of cactophilic Drosophila, flies that breed in rotting cactus tissue and feed on the yeasts and microorganisms that grow there. Then, as a postdoc, I sequenced three species of cactus moths, whose larvae feed on the commercially important prickly pear and the culturally significant cardón. Field sampling took us across the Quebrada de Humahuaca, a UNESCO World Heritage Site in northwestern Argentina, including the Pucará de Tilcara.

Since 2024, I've worked in industry: first with a synthetic biology startup developing a protein expression platform in black soldier fly, and now with Cannformatics, a health-tech company in Silicon Valley, building pipelines that test AI-generated hypotheses against clinical and biological evidence.

I have also dedicated a good part of my career to teaching, adapting the same ideas to very different audiences:

  • bioinformatics, Python and genomics for university students;
  • health informatics, health information systems, digital medical data, handling of sensitive personal information and AI for future health professionals;
  • bioinformatics workshops for students and early-career researchers through RSG Argentina;
  • generative AI for colleagues at a startup.

This profile is an archive, not a showcase. Some repositories are mature tools; others are early experiments I wrote while learning. I keep both because together they show how I got here.

📫 niconm89@gmail.com · LinkedIn · ORCID

Popular repositories Loading

  1. BUSCO2Tree BUSCO2Tree Public

    Reproducible phylogenomics pipeline that builds partitioned species trees from BUSCO v5 results.

    Python 5 1

  2. pipeFSC pipeFSC Public

    Pipeline to automate fastsimcoal2 demographic inference: replicate runs, model selection by AIC and parametric bootstrap. Used in Poveda-Martínez et al. 2024, Biological Invasions.

    R 1

  3. scripts_bioinformatics scripts_bioinformatics Public

    Scripts written in python to do basic tasks with common files in omics

    Python

  4. buzzatii-cluster_genomes buzzatii-cluster_genomes Public

    Genome assembly, annotation and phylogenomics of the Drosophila buzzatii cluster. Code and results from Moreyra et al. 2023, Molecular Phylogenetics and Evolution. http://dx.doi.org/10.1016/j.ympev…

    Visual Basic 6.0

  5. niconm89 niconm89 Public

    Config files for my GitHub profile.