Schwarzlab @ Institute for Computational Cancer Biology

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1. PhytClust PhytClust Public

   Clustering leaf nodes in phylogenetic trees using a fast and exact dynamic programming solution.

   Python 20 2

2. medicc2 medicc2 Public

   MEDICC2 - Minimum Event Distance for Intra-tumour Copy-number Comparisons. Latest version of our SCNA phylogeny algorithm..

   Python 10 2

3. PyFish PyFish Public

   PyFish is a Python 3 package for creation of Fish (Muller) plots in high-density populations.

   Jupyter Notebook 9

4. CNSistent CNSistent Public

   CNSistent is a general-purpose toolkit for integrated processing of SCNA profiles across many patients and cohorts.

   Jupyter Notebook 9

5. spice spice Public

   SPICE: Selection Patterns In somatic Copy-number Events

   Python 8 1

6. SMITH SMITH Public

   SMITH is a tool for fast stochastic simulation of evolution of subclones within a solid tumor.

   Jupyter Notebook 7