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multiome

Here are 6 public repositories matching this topic...

PMBio / mudatasets

Multimodal datasets, in MuData format

muon scrna-seq multi-omics scanpy anndata mudata multiome multimodal-omics

Updated Jan 13, 2023
Python

cellgeni / nf-atac

Pipeline to process sc-ATAC data with pyCistopic

python bioinformatics pipeline nextflow atac-seq single-cell single-cell-atac-seq single-cell-multiomics multiome

Updated May 23, 2026
Python

gtca / chame

Chromatin analysis module

genome atac-seq chromatin ranges scatac-seq multiome scverse

Updated Apr 29, 2025
Python

razofz / DB_QZ_multiome

Multiome (RNA+ATAC from same cell) data generated by Qinyu Zhang in David Bryder's lab. Paper here: https://doi.org/10.7554/eLife.91826.2

python rna-seq snakemake r atac-seq variational-autoencoder seurat multiome

Updated Mar 4, 2024
Python

glenritschel / ssc-skin-multiome-composition

SSc skin yields six times fewer fibroblast nuclei than healthy skin in GSE312129, a composition confound for any between-group claim from that dataset.

reproducibility single-cell geo-dataset multiome snatac-seq systemic-sclerosis scleroderma multiomescanpy

Updated Sep 15, 2026
Python

RyanSonder / nf-samap

A nextflow workflow that wraps SAMap

bioinformatics single-cell-analysis nextflow-pipeline multiome samap

Updated Jul 24, 2025
Python

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