An analysis and visualization platform for 'omics data
Efficient phylogenomic software by maximum likelihood
💾 📃 "Reads to report" for public health and clinical microbiology
BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
A tool for drawing ANI clustermap between all-vs-all microbial genomes
a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
Workflow for Building Microsynteny Networks
A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches
Hybridization detection using phylogenetic invariants
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
An R package to infer and analyze synteny networks from protein sequences
Robust identification of orthologous Synteny with the Orthology Index
a broadly applicable tool for automated gene identification and retrieval
Visualing species tree from ASTRAL with gene tree discordance
A tool for plotting CAFE5 gene family expansion/contraction result
PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datasets that consist of eukaryotic protein sequences.
Phyling: phylogenetic inference from annotated genomes
a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
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