pyrad

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Python Radar Data Processing

Collection of Python scripts for parsing/analyses of RAD-seq data

python snps vcf radseq pyrad

Tools for data conversion and results visualization for fineRADstructure (http://cichlid.gurdon.cam.ac.uk/fineRADstructure.html)

structure haplotypes stacks gbs radseq pyrad ipyrad fineradstructure

File conversion scripts for DNA sequence data

converter vcf fasta dna-sequences sequence-alignment conversion-script loci phylip pyrad bgc fileconversion svdquartets bayesian-genomic-cline genomic-cline

Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile

snps rad population-genomics population-genetics admixture hybridization phylip pyrad admixtools eigenstrat ddrad introgression f-statistics d-statistic rad-sequencing ddrad-sequencing geno ind

Random scripts for dealing with ddRAD data, including output from pyRAD

stats iq-tree radseq pyrad ddrad

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