rna-editing

SNP-free RNA editing Identification Toolkit

Clair3-RNA - a long-read small variant caller for RNA sequencing data

Deepred-Mt is a novel method based on deep neural networks to predict C-to-U editing sites in angiosperm mitochondrial RNA.

PREP: Prioritizing of RNA Editing-based Peptides

An awesome Oxford Nanopore Pipeline for direct RNA-sequencing

A-to-I RNA editing in Neurospora

ML-guided drug discovery, drug repurposing and antisense therapeutics against KRAS mutants in pancreatic cancer: ultra-large docking of 13.6B molecules, FDA-drug repurposing across 18 alleles, and ADAR-recruiting antisense guide RNAs. Nextflow + Python. Code and protocols only, no data.

Trypanosome RNA Editing Alignment Tool

Mapping of RNAseq data on reference genome using Hisat2 for reduced mismatch penalties

Standalone paired-end NGS pipeline for RNA editing analysis with FastQC, fastp, Bowtie2, SAMtools, and REDItools2

This repository contains the script written for PPR assembly automation with an OT2 system.

RNA editing (A-to-I) detection from RNA-seq using REDItools

ORCA · SUSTech — programmable RNA editing design, evidence review, and reproducible reports.

Pipeline for m6A detection in RNAseq data

Amber Bio — independent third-party profile of a public API surface, by API Evangelist. Amber Bio is a San Francisco biotechnology company developing an RNA-based gene-editing platform capable of making multi-kilobase edits — rewriting thousands of bases on a single RNA strand in one step — to reach previously undruggable patient populations.