rsv

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

RSV = Rows of String Values

Rows of String Values (RSV Data Format) Specification - A Simple Binary Alternative to CSV

MIRA: Portable, Interactive Application for High-Quality Influenza, SARS-CoV-2 and RSV Genome Assembly, Annotation, and Curation

A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.

Code for modeling RSV resurgence following contact restrictions

R package providing helper functions for CDC forecast hub maintenance and report generation.

Cost effectiveness analysis of maternal vaccines and monoclonal antibodies against RSV in Kenya and South Africa

A module for reading and writing an RSV document file.

Comparison and Analysis of Relative Search Volumes for Autism vs Autism Spectrum Disorder, enriched with geopandas plots.

Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.

Observation-aware weekly COVID-19, influenza, and RSV surveillance data for the 50 US states and DC: CDC hospital admissions (NHSN), ED visits (NSSP), and wastewater (NWSS) plus Census context, with reliability flags on every value and source-release provenance.

Pipeline for analyses of multiple pathogens, like SARS-CoV-2 with positivity rate analyses

Archive of CDC releases and the pipeline that builds ObsAwareData

rsv encoder/decoder with serde support

Assessment and optimization of respiratory syncytial virus prophylaxis regimens in Connecticut, 1996-2013

Publication-linked RSV-A and RSV-B whole-genome analysis workflow for the Islamabad 2022–2023 study

This tool aims to summarize newly published research evaluating the effectiveness and safety of vaccine and immunization products for COVID-19, influenza, and respiratory syncytial virus (RSV) that are available in the United States.

COVID-19, flu and RSV levels from public wastewater data, with 6-week ML forecasts and a go-or-avoid planner for everyday plans. Covers Scotland, the US, Canada, Germany, the Netherlands and New Zealand. Static site, refreshed daily, one-command Linux install.