Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data
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Oct 25, 2026 - Python
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mycobacterium
Here are 7 public repositories matching this topic...
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
bioinformatics snakemake mycobacterium-tuberculosis-complex structural-variants mycobacterium-tuberculosis mycobacterium bacterial-genome-analysis
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Mar 13, 2025 - Python
List of online databases and resources for Mycobacterium Tuberculosis
list integration genomics curated computational-biology drug-discovery proteomics omics transcriptomics proteomics-data tuberculosis proteomics-datasets proteomics-data-integration mycobacterium-tuberculosis transcriptomics-datasets transcriptomics-data-integration transcriptomics-data genomics-data genomics-data-sets mycobacterium
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Mar 14, 2019
MTBVeb: A Web-Based Platform for Designing Vaccines against Existing and Emerging Strains of Mycobacterium tuberculosis
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May 20, 2026
This repository contains the data and methods for characterization of integrated prophages within different species of clinical non-tuberculous mycobacterial genomes
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Dec 16, 2020 - Jupyter Notebook
Snakemake pipeline for assigning M. abscessus clinical isolates to Dominant Circulating Clones (DCC1–7) and identifying transmission pairs from whole genome sequencing data
bioinformatics snakemake genomics transmission phylogenomics whole-genome-sequencing bacterial-genomes mycobacterium
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Jul 2, 2026 - Python
Nextflow DSL2 pipeline for MTBC speciation and zoonotic TB surveillance (M. orygis focus)
bioinformatics nextflow wgs tuberculosis mycobacterium-tuberculosis mycobacterium one-health pathogen-surveillance snp-typing genomics-pip
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Sep 17, 2026 - Nextflow
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