A 'megaplot' is a 'shiny' application and as the name suggests, is a huge graphical display showing individual-level data over time interactively.
Differential accessibility and time-course analysis for ATAC-seq data, with likelihood-ratio tests, gaussian process regression and optional motif analysis and footprinting.
🌈 chromhandler is a Python package designed to streamline the processing and analysis of chromatographic data, enabling efficient metadata enrichment and conversion to EnzymeML format for further analysis.
Method for aligning biological replicate data
Method for aligning biological replicate data
My Spring 2024 term project for NYU's Applied Genomics graduate course (M.S. Biology). Using data from Brar et al, analysis of average gene expression on certain regions of baker's yeast chromosomes during traditional time course meiosis.
Fitting time-course metabolomics onto genome-scale metabolic models for inferring metabolic activity.
A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.
A collection of trans-omic datasets
Topology-based analysis and querying of short longitudinal multi-omics trajectories using Omics Trajectory Signatures (OTS)
RNA-seq time course analysis pipeline: DESeq2 → GSEA → Pathview → interactive HTML report
A complete R analysis pipeline for MD Anderson RPPA Core output
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